BSRC "Alexander Fleming" Publications

2026 - (12)

Alexopoulos H, Samiotaki M, Gkogkou E, Mavromati S, Bitzogli K, Panagiotou G, Tzioufas A, Magira E, Kotanidou Α, Trougakos I. 2026, "Proteomic Analysis of Cerebrospinal Fluid from Severe COVID-19 Patients Reveals Prognostic Biomarkers Associated with Disease Outcome.", Proteomics Clin Appl., 2026 Mar; 20(2):e70042.doi: 10.1002/prca.70042 [PubMed].

Kyritsis A, Beta RA, Scutelnic D, Stravokefalou V, Del Vescovo V, Arsenopoulou ZV, Papikinos K, Grasso M, Fontana F, Moutopoulou P, Tsiporis A, Samiotaki M, Panayotou G, Denti MA, Balatsos NA. 2026, "Mutual feedback regulation between Poly(A)-specific ribonuclease (PARN) and cognate microRNAs.", Life Sci Alliance., 2026 Mar 13; 9(5):e202503341. doi: 10.26508/lsa.202503341. [PubMed].

Papageorgiou MP, Nussbaumer M, Samiotaki M, Filiou MD. 2026, ". Pre-Stress Trait Anxiety Levels Shape Hippocampal Responses to Acute Stress in High Anxiety Male Mice.", J Neurochem., 2026 Mar; 170(3):e70362. doi: 10.1111/jnc.70362 [PubMed].

Anastasia Alexaki, Fotis Baltoumas, Dimitrios Tzanetakos, Chrysoula Zografou, Theodoros Dame, Chrysoula Michaletou, Galini Kyriakaki, Aglaia G Vakrakou, Maria Anagnostouli, Georgia Karadima, Marianna Tzanoudaki, Marinos C Dalakas, Leonidas Stefanis, Konstantinos Kilidireas, Kevin C O'Connor, Georgios Pavlopoulos, Panos Stathopoulos. 2026, "B cell tolerance checkpoint function in multiple sclerosis and transient CD52 depletion", J Neuroimmunol., 2026 Apr: 413:578854. doi: 10.1016/j.jneuroim.2026.578854. Epub 2026 Jan 5. [PubMed].

Evangelos Karatzas, Martin Beracochea, Fotis A Baltoumas, Eleni Aplakidou, Lorna Richardson, James A Fellows Yates, Daniel Lundin; nf-core community; Aydin Buluç, Nikos C Kyrpides, Ilias Georgakopoulos-Soares, Georgios A Pavlopoulos, Robert D Finn. 2026, "nf-core/proteinfamilies: a scalable pipeline for the generation of protein families", Gigascience., 2026 Jan 21:15: giag009. doi: 10.1093/gigascience/giag009. [PubMed].

Margaritopoulou, T., Foutadakis, S., Vatsellas, G., Samiotaki, M., Markellou, E. 2026, "A Genome-Wide DNA Methylation Survey Reveals Salicylic Acid-Induced Distinct Hypomethylation Linked to Defense Responses Against Biotrophic Pathogens", International Journal of Molecular Sciences, , 27(4), 1935. [doi].

Kimonas Provatas, Candace S Y Chan, Ioannis Kerasiotis, Eleftherios Bochalis, Akshatha Nayak, Brad E Zacharia, Georgios A Pavlopoulos, Wei Li, Ilias Georgakopoulos-Soares. 2026, "neomerDB: a comprehensive database of neomer biomarkers in cancer", Database (Oxford)., 2026 Jan 15: 2026:baag006. doi: 10.1093/database/baag006. [PubMed].

Mateus B Fiamenghi, Antonio Pedro Camargo, Iro N Chasapi, Fotis A Baltoumas, Simon Roux, Artyom A Egorov, Eleni Aplakidou, Eric Olo Ndela, Yumary M Vasquez, I-Min A Chen, Krishna Palaniappan, T B K Reddy, Supratim Mukherjee, Natalia N Ivanova, Frederik Schulz, Tanja Woyke, Emiley A Eloe-Fadrosh, Georgios A Pavlopoulos, Nikos C Kyrpides. 2026, "Meta-virus resource (MetaVR): expanding the frontiers of viral diversity with 24 million uncultivated virus genomes", Nucleic Acids Res., 2026 Jan 6;54(D1):D801-D812. doi: 10.1093/nar/gkaf1283. [PubMed].

Margaritis Tsifintaris, Dimitris Grigoriadis, Michail Sitmalidis, Panagiotis Repanas, Evdoksia K Lazarashvili, Christina Anastasiadi, Ioannis Kavakiotis, Raphael Sandaltzopoulos, Georgios A Pavlopoulos, Antonis Giannakakis. 2026, "ASTRA: a comprehensive resource of stress-induced transcriptional activity in human cell lines", Nucleic Acids Res., 2026 Jan 6; g54(D1):D938-D948. doi: 10.1093/nar/gkaf1174. [PubMed].

Maria N Chasapi, Iro N Chasapi, Eleni Aplakidou, Fotis A Baltoumas, Evangelos Karatzas, Ioannis Iliopoulos, Dimitrios J Stravopodis, Ioannis Z Emiris, Aydin Buluç, Ilias Georgakopoulos-Soares, Nikos C Kyrpides, Georgios A Pavlopoulos. 2026, "metagRoot: a comprehensive database of protein families associated with plant root microbiomes", Nucleic Acids Res., 2026 Jan 6;54(D1):D1733-D1742. doi: 10.1093/nar/gkaf862. [PubMed].

Kanellopoulou P, Barbayianni I, Fanidis D, Samiotaki M, Katsiouli E, Nastos D, Smyrniotis S, Shira M, Galaris A, Rinotas V, Grammenoudi S, Magkrioti C, Tomos I, Martinez Blanco A, Tremi I, Vamvakaris I, Gavara N, Havaki S, Gorgoulis V, Watanabe H, Aidinis V. 2026, "Versican expression from lung fibroblasts suppresses pulmonary fibrosis.", Nat Commun., 2026 Jan 21. doi: 10.1038/s41467-026-68377-5. Online ahead of print. [PubMed].

Nikopaschou M, Rouni G, Samiotaki M. 2026, "Methods for Isolating and Analyzing the HLA Class I Immunopeptidome.", Methods Mol Biol., 2026;3007:65-85. doi: 10.1007/978-1-0716-5092-9_6. [PubMed].