BSRC "Alexander Fleming" Publications

2023 - (21)

Karatzas E, Baltoumas FA, Aplakidou E, Kontou PI, Stathopoulos P, Stefanis L, Bagos PG, Pavlopoulos GA. 2023, "Flame (v2.0): advanced integration and interpretation of functional enrichment results from multiple sources.", Bioinformatics., 2023 Aug 4 :btad490. doi: 10.1093/bioinformatics/btad490 [PubMed].

Anastasios Liakos, Anna-Chloe Synacheri, Dimitris Konstantopoulos, Georgios C Stefos, Matthieu D Lavigne, Maria Fousteri. 2023, "Enhanced frequency of transcription pre-initiation complexes assembly after exposure to UV irradiation results in increased repair activity and reduced probabilities for mutagenesis", Nucleic Acids Research, gkad593 [doi].

Pantazopoulou M, Lamprokostopoulou A, Karampela DS, Alexaki A, Delis A, Coens A, Samiotaki M, Kriebardis AG, Melki R, Pagakis SN, Stefanis L, Vekrellis K. 2023, "Differential intracellular trafficking of extracellular vesicles in microglia and astrocytes. ", Cell Mol Life Sci., 2023 Jun 30; 80(7):193. doi: 10.1007/s00018-023-04841-5. [PubMed].

Temponeras I, Samiotaki M, Koumantou D, Nikopaschou M, Kuiper JJW, Panayotou G, Stratikos E. 2023, "Distinct modulation of cellular immunopeptidome by the allosteric regulatory site of ER aminopeptidase 1.", Eur J Immunol., 2023 May 3: e2350449. doi: 10.1002/eji.202350449. Online ahead of print. [PubMed].

Kokoli M., Karatzas E., Baltoumas FA., Schneider R., Pafilis E., Paragkamian S., Doncheva TN., Jensen LJ., Pavlopoulos GA. 2023, "Arena3D^web: Interactive 3D visualization of multilayered networks supporting multiple directional information channels, clustering analysis and application integration", NAR Genomics and Bioinformatics, Volume 5, Issue 2, June 2023, lqad053 [doi], [PubMed].

Katsiougiannis S, Stergiopoulos A, Moustaka K, Havaki S, Samiotaki M, Stamatakis G, Tenta R, Skopouli FN. 2023, "Salivary gland epithelial cell in Sjögren's syndrome: Metabolic shift and altered mitochondrial morphology toward an innate immune cell function. ", J Autoimmun. , 2023 Apr ;136:103014. doi: 10.1016/j.jaut.2023.103014. Epub 2023 Mar 8. [PubMed].

Ergina Vourkou, Eva D Rouiz Ortega, Sumeet Mahajan, Amrit Mudher, Efthimios M C Skoulakis. 2023, "Human Tau Aggregates Are Permissive to Protein Synthesis-Dependent Memory in Drosophila Tauopathy Models", J Neurosci., 2023 Apr 19; 43(16):2988-3006. doi: 10.1523/JNEUROSCI.1374-22.2023. Epub 2023 Mar 3. [PubMed].

Papadopoulou D, Roumelioti F, Tzaferis C, Chouvardas P, Pedersen AK, Charalampous F, Christodoulou-Vafeiadou E, Ntari L, Karagianni N, Denis MC, Olsen JV, Matralis AN, Kollias G. 2023, "Repurposing antipsychotic drug Amisulpride for targeting synovial fibroblast activation in arthritis", JCI insight, 2023 Apr 4; e165024 [PubMed].

Skodra C, Michailidis M, Moysiadis T, Stamatakis G, Ganopoulou M, Adamakis IS, Angelis L, Ganopoulos I, Tanou G, Samiotaki M, Bazakos C, Molassiotis A. 2023, "Disclosing the molecular basis of salinity priming in olive trees using proteogenomic model discovery.", Plant Physiol., 2023 Mar 17; 191(3):1913-1933. doi: 10.1093/plphys/kiac572. [PubMed].

Papadopoulos G, Legaki AI, Georgila K, Vorkas P, Giannousi E, Stamatakis G, Moustakas II, Petrocheilou M, Pyrina I, Gercken B, Kassi E, Chavakis T, Pateras IS, Panayotou G, Gika H, Samiotaki M, Eliopoulos AG, Chatzigeorgiou A. 2023, "Integrated omics analysis for characterization of the contribution of high fructose corn syrup to non-alcoholic fatty liver disease in obesity.", Metabolism., 2023 Mar 28: 155552. doi: 10.1016/j.metabol.2023.155552. Online ahead of print. [PubMed].

Fanidis D, Pezoulas VC, Fotiadis DΙ, Aidinis V. 2023, "n explainable machine learning-driven proposal of pulmonary fibrosis biomarkers.", Comput Struct Biotechnol J., 2023; 21:2305-2315 [PubMed].

T Karampitsakos, A Galaris, I Barbayianni, G DeIuliis, F Ahangari, F Sampsonas, V Sotiropoulou, Aidinis V, AM Bennett, JD Herazo Maya, N Xylourgidis, P Bakakos, D Bouros, N Kaminski, A Tzouvelekis. 2023, "SH2 Domain-Containing Phosphatase-SHP2 Attenuates Fibrotic Responses through Negative Regulation of Mitochondrial Metabolism in Lung Fibroblasts.", Diagnostics 2023, 13 (6), 1166. [PubMed].

Stylianaki EA, Magkrioti C, Ladopoulou EM, Papavasileiou KD, Lagarias P, Melagraki G, Samiotaki M, Panayotou G, Dedos SG, Afantitis A, Aidinis V, Matralis AN. 2023, ""Hit" to lead optimization and chemoinformatic studies for a new series of Autotaxin inhibitors.", Eur J Med Chem., 2023 Mar 5; 249:115130. [PubMed].

Kolokotroni A, Gkikopoulou E, Rinotas V, Douni E. 2023, "Phosphotungstic acid-enhanced microcomputed tomography for quantitative visualization of mouse mammary gland morphology.", Journal of Medical Imaging, 10 (Suppl 2): S22402. doi: 10.1117/1.JMI.10.S2.S22402 [PubMed].

Baltoumas FA., Karatzas E., Paez-Espino D., Venetsianou N., Aplakidou E., Oulas A., Finn RD., Ovchinnikov S., Pafilis E., Kyrpides NC., Pavlopoulos GA. 2023, "Exploring microbial functional biodiversity at the protein family level - from metagenomic sequence reads to annotated protein clusters", Frontiers in Bioinformatics, 03 March 2023, Volume 3 -2023, [doi], [LINK], [PubMed].

Gomes PA, Bodo C, Nogueras-Ortiz C, Samiotaki M, Chen M, Soares-Cunha C, Silva JM, Coimbra B, Stamatakis G, Santos L, Panayotou G, Tzouanou F, Waites CL, Gatsogiannis C, Sousa N, Kapogiannis D, Costa-Silva B, Sotiropoulos I. 2023, "A novel isolation method for spontaneously released extracellular vesicles from brain tissue and its implications for stress-driven brain pathology.", Cell Commun Signal., 2023 Feb 13; 21(1):35. doi: 10.1186/s12964-023-01045-z. [PubMed].

Katerina Karkali, Timothy E Saunders, George Panayotou, Enrique Martín-Blanco. 2023, "JNK signaling in pioneer neurons organizes ventral nerve cord architecture in Drosophila embryos", Nat Commun., 2023 Feb 7; 14(1):675. doi: 10.1038/s41467-023-36388-1. [PubMed].

Grammatikopoulou MG, Skoufas E, Kanellakis S, Sanoudou D, Pavlopoulos GA, Eliopoulos AG, Gkouskou KK. 2023, "Ageotypes revisited: The brain and central nervous system dysfunction as a major nutritional and lifestyle target for healthy aging.", Maturitas., 2023 Feb 6; 170:51-57. doi: 10.1016/j.maturitas.2023.01.013. [PubMed].

Bhattarai S, Subedi U, Manikandan S, Sharma S, Sharma P, Miller C, Bhuiyan MS, Kidambi S, Aidinis V, Sun H, Miriyala S, Panchatcharam M. 2023, "Endothelial Specific Deletion of Autotaxin Improves Stroke Outcomes.", Cells., 2023 Feb 3; 12(3):511. [PubMed].

Boutsika A, Michailidis M, Ganopoulou M, Dalakouras A, Skodra C, Xanthopoulou A, Stamatakis G, Samiotaki M, Tanou G, Moysiadis T, Angelis L, Bazakos C, Molassiotis A, Nianiou-Obeidat I, Mellidou I, Ganopoulos I. 2023, "A wide foodomics approach coupled with metagenomics elucidates the environmental signature of potatoes.", iScience., 2023 Jan 5; 26(1):105917. doi: 10.1016/j.isci.2022.105917. eCollection 2023 Jan 20. [PubMed].

Smaragda Fanourgakis, Anna-Chloe Synacheri, Matthieu D. Lavigne, Dimitris Konstantopoulos, Maria Fousteri. 2023, "Histone H2Bub dynamics in the 5' region of active genes are tightly linked to the UV-induced transcriptional response.", Computational and Structural Biotechnology Journal, 21: 614-629. doi.org/10.1016/j.csbj.2022.12.013 [Link].