BSRC "Alexander Fleming" Publications

2022 - (28)

Taze C, Drakouli S, Samiotaki M, Panayotou G, Simos G, Georgatsou E, Mylonis I. 2022, "Short-term hypoxia triggers ROS and SAFB mediated nuclear matrix and mRNA splicing remodeling.", Redox Biol., 2022 Nov 17; 58:102545. doi: 10.1016/j.redox.2022.102545. Online ahead of print. [PubMed].

Georgiou-Siafis SK, Samiotaki MK, Demopoulos VJ, Panayotou G, Tsiftsoglou AS. 2022, "Glutathione-Hemin/Hematin Adduct Formation to Disintegrate Cytotoxic Oxidant Hemin/Hematin in Human K562 Cells and Red Blood Cells' Hemolysates: Impact of Glutathione on the Hemolytic Disorders and Homeostasis.", Antioxidants (Basel)., 2022 Sep 30; 11(10):1959. doi: 10.3390/antiox11101959 [PubMed].

Armakolas A, Dimopoulou V, Nezos A, Stamatakis G, Samiotaki M, Panayotou G, Tampaki M, Stathaki M, Dourakis S, Koskinas J. 2022, "Cellular, Molecular and Proteomic Characteristics of Early Hepatocellular Carcinoma.", Curr Issues Mol Biol. , 2022 Oct 10; 44(10):4714-4734. doi: 10.3390/cimb44100322 [PubMed].

Temponeras I, Stamatakis G, Samiotaki M, Georgiadis D, Pratsinis H, Panayotou G, Stratikos E. 2022, "ERAP2 Inhibition Induces Cell-Surface Presentation by MOLT-4 Leukemia Cancer Cells of Many Novel and Potentially Antigenic Peptides.", Int J Mol Sci. , 2022 Feb 8; 23(3):1913. doi: 10.3390/ijms23031913 [PubMed].

Antoniou N, Prodromidou K, Kouroupi G, Boumpoureka I, Samiotaki M, Panayotou G, Xilouri M, Kloukina I, Stefanis L, Grailhe R, Taoufik E, Matsas R. 2022, "High content screening and proteomic analysis identify a kinase inhibitor that rescues pathological phenotypes in a patient-derived model of Parkinson's disease.", NPJ Parkinsons Dis., 2022 Feb 11; 8(1):15. doi: 10.1038/s41531-022-00278-y. [PubMed].

Karra AG, Sioutopoulou A, Gorgogietas V, Samiotaki M, Panayotou G, Psarra AG. 2022, "Proteomic analysis of the mitochondrial glucocorticoid receptor interacting proteins reveals pyruvate dehydrogenase and mitochondrial 60 kDa heat shock protein as potent binding partners.", J Proteomics., 2022 Apr 15; 257:104509. doi: 10.1016/j.jprot.2022.104509. Epub 2022 Feb 4. [PubMed].

Chandris P, Giannouli CC, Panayotou G, . 2022, "Imaging Approaches for the Study of Metabolism in Real Time Using Genetically Encoded Reporters.", Front Cell Dev Biol., 2022 Jan 18; 9:725114. doi: 10.3389/fcell.2021.725114. eCollection 2021. [PubMed].

Rogalska ME, Vafiadaki E, Erpapazoglou Z, Haghighi K, Green L, Mantzoros CS, Hajjar RJ, Tranter M, Karakikes I, Kranias EG, Stillitano F, Kafasla P*, Sanoudou D*. 2022, "Isoform changes of action potential regulators in the ventricles of arrhythmogenic phospholamban-R14del humanized mouse hearts.", Metabolism., 2022 Nov 11: 155344. doi: 10.1016/j.metabol.2022.155344. *equal contribution [PubMed].

Vourkou E, Paspaliaris V, Bourouliti A, Zerva MC, Prifti E, Papanikolopoulou K, Skoulakis EMC. 2022, "Differential Effects of Human Tau Isoforms to Neuronal Dysfunction and Toxicity in the Drosophila CNS", Int J Mol Sci., 2022 Oct 26;23(21):12985. doi: 10.3390/ijms232112985. [PubMed].

Selvitopi O., Ekanayake S., Guidi G., Awan M., Pavlopoulos GA., Azad A., Kyrpides N., Oliker L., Yelick K., Buluç A. 2022, "Extreme-scale many-against-many protein similarity search", ΙΕΕΕ, SC22: International Conference for High Performance Computing, Networking, Storage and Analysis, Dallas, TX, US, 2022 pp. 1-12. Nominated for the ACM Gordon Bell Prize award , LINK.

Theodosia Charitou, Panagiota I. Kontou, Ioannis A. Tamposis, Georgios A. Pavlopoulos, Georgia G. Braliou, Pantelis G. Bagos. 2022, "Drug genetic associations with COVID-19 manifestations: a data mining and network biology approach.", Pharmacogenomics J, 2022 Sep 28, doi: 10.1038/s41397-022-00289-1 [PubMed].

Baltsavia I., Theodosiou T., Papanikolaou N., Pavlopoulos GA., Amoutzias GD., Panagopoulou M., Chatzaki E., Andreakos E., Iliopoulos I. 2022, "Prediction and Ranking of Biomarkers Using multiple UniReD", Int J Mol Sci., 2022 Sep 21;23(19):11112. doi: 10.3390/ijms231911112. [PubMed].

Papadaki G, Goutakoli P, Tiniakou I, Grün JR, Grützkau A, Pavlopoulos GA, Iliopoulos I, Bertsias G, Boumpas D, Ospelt C, Reizis B, Sidiropoulos P, Verginis P. 2022, "IL-6 Signaling Attenuates TNF-α Production by Plasmacytoid Dendritic Cells in Rheumatoid Arthritis.", J Immunol, 2022 Sep 23:, ji2100882. doi: 10.4049/jimmunol.2100882. Online ahead of print. [PubMed].

Yan M, Komatsu N, Muro R, Huynh NCN, Tomofuji Y, Okada Y, Suzuki HI, Takaba H, Kitazawa R, Kitazawa S, Pluemsakunthai W, Mitsui Y, Satoh T, Okamura T, Nitta T, Im SH, Kim CJ, Kollias G, Tanaka S, Okamoto K, Tsukasaki M, Takayanagi H. 2022, "ETS1 governs pathological tissue-remodeling programs in disease-associated fibroblasts", Nat Immunol. , doi: 10.1038/s41590-022-01285-0 [PubMed].

Bourouliti A, Skoulakis EMC. 2022, "Anesthesia Resistant Memories in Drosophila, a Working Perspective.", Int J Mol Sci., 2022 Jul 31;, 23(15):8527. doi: 10.3390/ijms23158527 [PubMed].

Armaka M, Konstantopoulos D, Tzaferis C, Lavigne MD, Sakkou M, Liakos A, Sfikakis PP, Dimopoulos MA, Fousteri M & Kollias G. 2022, "Single-cell multimodal analysis identifies common regulatory programs in synovial fibroblasts of rheumatoid arthritis patients and modeled TNF-driven arthritis.", Genome Med. , 14(1) :78. [PubMed].

Bourouliti A, Skoulakis EMC. 2022, "Cold Shock Disrupts Massed Training-Elicited Memory in Drosophila.", Int J Mol Sci., 2022 Jun 8;, 23(12):6407. doi: 10.3390/ijms23126407 [PubMed].

Enrico Ne, Raquel Crespo, Ray Izquierdo-Lara, Shringar Rao, Selin Koçer, Alicja Górska, Thomas van Staveren, Tsung Wai Kan, David van de Vijver, Dick Dekkers, Casper Rokx, Panagiotis Moulos, Pantelis Hatzis, Robert-Jan Palstra, Jeroen Demmers, Tokameh Mahmoudi. 2022, "Catchet-MS identifies IKZF1-targeting thalidomide analogues as novel HIV-1 latency reversal agents", Nucleic Acids Res, 2022 Jun 10; 50(10):5577-5598. doi: 10.1093/nar/gkac407. [PubMed].

Kleio-Maria Verrou, Georgios A. Pavlopoulos, Panagiotis Moulos. 2022, "Protocol for unbiased, consolidated variant calling from whole exome sequencing data", STAR Protocοls, 2022 May 30;, 3(2):101418. doi: 10.1016/j.xpro.2022.101418. eCollection 2022 Jun 17 [PubMed].

Karatzas E., Koutrouli M., Baltoumas F., Papanikolopoulou K., Bouyioukos C., Pavlopoulos GA, 2022, "The network makeup artist (NORMA-2.0): Distinguishing annotated groups in a network using innovative layout strategies", Bioinformatics Advances, 13 May 2022;, doi:10.1093/bioadv/vbac036 .

Galanis A., Vardakas P., Reczko M., Harokopos V., Hatzis P., Skoulakis E., Pavlopoulos GA., Patalano S. 2022, "Bee foraging preferences, microbiota and pathogens revealed by direct shotgun metagenomics of honey", Molecular Ecology Resources, 2022 May 20. , doi: 10.1111/1755-0998.13626 [PubMed].

Bothos E, Hatzis P, Moulos P. 2022, "Interactive Analysis, Exploration, and Visualization of RNA-Seq Data with SeqCVIBE", Methods Protoc, 2022, 5(2):27. [PubMed].

Kiparaki M, Khan C, Folgado-Marco V, Chuen J, Moulos P, Baker NE. 2022, "The transcription factor Xrp1 orchestrates both reduced translation and cell competition upon defective ribosome assembly or function", eLife, 2022, 11: e71705 [PubMed].

Evangelos Karatzas, Fotis A. Baltoumas, Ioannis Kasionis, Despina Sanoudou, Aristides G. Eliopoulos, Theodosios Theodosiou, Ioannis Iliopoulos, Georgios A. Pavlopoulos. 2022, "Darling: A Web Application for Detecting Disease-Related Biomedical Entity Associations with Literature Mining", Biomolecules, 12, no. 4: 520. [doi], [Link], [PubMed].

Sofia Gargani, Niki Lourou, Christina Arapatzi, Dimitris Tzanos, Marania Saridaki, Esmeralda Dushku, Margarita Chatzimike, Nikolaos D Sidiropoulos, Margarita Andreadou, Vasileios Ntafis, Pantelis Hatzis, Vassiliki Kostourou, Dimitris L Kontoyiannis. 2022, "Inactivation of AUF1 in Myeloid Cells Protects From Allergic Airway and Tumor Infiltration and Impairs the Adenosine-Induced Polarization of Pro-Angiogenic Macrophages", Front Immunol., 2022 Feb 11 13:752215. doi: 10.3389/fimmu.2022.752215. eCollection 2022. [PubMed].

Zafeiropoulos, Haris, Savvas Paragkamian, Stelios Ninidakis, Georgios A. Pavlopoulos, Lars J. Jensen, and Evangelos Pafilis. 2022, "PREGO: A Literature and Data-Mining Resource to Associate Microorganisms, Biological Processes, and Environment Types", Microorganisms, 10, no. 2: 293. [doi], [PubMed].

Dimitra Kerdidani, Emmanouil Aerakis, Kleio-Maria Verrou, Ilias Angelidis, Katerina Douka, Maria-Anna Manio, Petros Stamoulis, Katerina Goudevenou, Alejandro Prados, Christos Tzaferis, Vasileios Ntafis, Ioannis Vamvakaris, Evangelos Kaniaris, Konstantinos Vachlas, Evangelos Sepsas, Anastasios Koutsopoulos, Konstantinos Potaris, Maria Tsoumakidou. 2022, "Lung tumor MHCII immunity depends on in situ antigen presentation by fibroblasts", J Exp Med, 022 Feb 7; 219(2):e20210815. doi: 10.1084/jem.20210815. Epub 2022 Jan 14. [PubMed].

Vasiliki-Iris Perivolidi, Foteini Violitzi, Elisavet Ioannidou, Vagelis Rinotas, George Stamatakis, Martina Samiotaki, George Panayotou, Eleni Douni. 2022, "Proteomic Identification of the SLC25A46 Interactome in Transgenic Mice Expressing SLC25A46-FLAG", J Proteome Res, 2022 Jan 5 doi: 10.1021/acs.jproteome.1c00728. Online ahead of print. [PubMed].