Publications

Moulos, P., Alexandratos, A., Nellas, I., Dedos, S.G.: Refining a steroidogenic model: an analysis of RNA-seq datasets from insect prothoracic glands. BMC Genomics 2018, 19(1):537.

• Buffin-Meyer, B., Klein, J., Breuil, B., Muller, F., Moulos, P., Groussolles, M., Bouali, O., Bascands, J.-L., Decramer, S., Schanstra, J.-P.: Combination of the fetal urinary metabolome and peptidome for the prediction of postnatal renal outcome in fetuses with PUV. J Proteomics 2018, 184:1-9.

• Nikolaou, K.C., Moulos, P., Harokopos, V., Chalepakis, G., Talianidis, I.: Kmt5a Controls Hepatic Metabolic Pathways by Facilitating RNA Pol II Release from Promoter-Proximal Regions. Cell Rep. 2017, 20(4):909-922.

• Papadopoulos, T., Casemayou, A., Neau, E., Breuil, B., Caubet, C., Calise, D., Thornhill, B.A., Bachvarova, M., Belliere, J., Chevalier, R.L., Moulos, P., Bachvarov, D., Buffin-Meyer, B., Decramer, S., Auriol, F.C., Bascands, J.L., Schanstra, J.P., Klein, J.: Systems biology combining human- and animal-data miRNA and mRNA data identifies new targets in ureteropelvic junction obstruction. BMC Syst Biol. 2017, 11(1):31.

• Boizard, F., Brunchault, V., Moulos, P., Breuil, B., Klein, J., Lounis, N., Caubet, C., Tellier, S., Bascands, J.L., Decramer, S., Schanstra, J.P., Buffin-Meyer, B.: A capillary electrophoresis coupled to mass spectrometry pipeline for long term comparable assessment of the urinary metabolome. Sci Rep. 2016, 6:34453.

Moulos, P., Samiotaki, M., Panayotou, G., Dedos, S.G.: Combinatory annotation of cell membrane receptors and signalling pathways of Bombyx mori prothoracic glands. Sci Data. 2016, 3:160073.

• Giakountis, A., Moulos, P., Sarris, M.E., Hatzis, P., Talianidis, I.: Smyd3-associated regulatory pathways in cancer. Semin Cancer Biol. 2016, S1044-579X(16)30041-4.

• Papadodima, O., Moulos, P., Koryllou, A., Piroti, G., Kolisis, F., Chatziioannou, A., Pletsa, V.: Modulation of Pathways Underlying Distinct Cell Death Mechanisms in Two Human Lung Cancer Cell Lines in Response to SN1 Methylating Agents Treatment. PLoS One. 2016, 11(7):e0160248.

• Giakountis, A, Moulos, P., Zarkou, V., Oikonomou, C., Harokopos, V., Hatzigeorgiou, A.G., Reczko, M., Hatzis, P.: A Positive Regulatory Loop between a Wnt-Regulated Non-coding RNA and ASCL2 Controls Intestinal Stem Cell Fate. Cell Reports. 2016, S2211-1247(16)30621-0.

Moulos, P., Sarris, M.E., Talianidis, I.: Mechanism of gene-specificity of oncogenic regulators. Cell Cycle. 2016, 15(17): 2227-8.

• Arvaniti, E., Moulos, P., Vakrakou, A., Chatziantoniou, C., Chadjichristos, C., Kavvadas, P, Charonis, A., Politis, P.K.: Whole-transcriptome analysis of UUO mouse model of renal fibrosis reveals new molecular players in kidney diseases. Sci Rep. 2016, 6:26235.

• Sarris, M.E., Moulos, P., Haroniti, A., Giakountis, A., Talianidis, I.: Smyd3 Is a Transcriptional Potentiator of Multiple Cancer-Promoting Genes and Required for Liver and Colon Cancer Development. Cancer Cell. 2016, 29(3):354-66.

• Alexandratos, A., Moulos, P., Nellas, I., Mavridis, K., Dedos. S.G.: Reassessing ecdysteroidogenic cells from the cell membrane receptors' perspective. Sci Rep. 2016, 6:2022.

• Nikolaou, K.C., Moulos, P., Chalepakis, G., Hatzis, P., Oda, H., Reinberg, D., Talianidis, I.: Spontaneous development of hepatocellular carcinoma with cancer stem cell properties in PR-SET7-deficient livers. EMBO J. 2015, 34(4), 430-47.

Moulos, P., Hatzis, P.: Systematic integration of RNA-Seq statistical algorithms for accurate detection of differential gene expression patterns. Nucleic Acids Res. 2015, 43(4), e25.

Moulos, P., Klein,. J., Jupp, S., Stevens, R., Bascands, J.-L., Schanstra, J.P.: The KUPNetViz: A biological network viewer for multiple -omics datasets in kidney diseases. BMC Bioinformatics 2013, 14:235.

• Klein, J., Jupp, S., Moulos, P., Fernandez, M., Buffin-Meyer, B., Chayaa, R., Charonis, A., Bascands, J.-L., Stevens, R., Schanstra, J.-P.: The KUPKB: a novel Web application to access multiomics data on kidney disease. FASEB J. 2012, 26(5), 2145-2153.

• Rao, N.A.S., McCalman, M.T., Moulos, P., Francoijs, K.J., Chatziioannou, A., Kolisis, F.N., Alexis, M.N., Stunnenberg, H.G., Mitsiou, D.J.: Coactivation of GR and NFKB alters the repertoire of their binding sites and target genes. Genome Res. 2011, 21(9), 1404-1416 (equal first authorship) .

• Chatziioannou, A., Kanaris, I., Doukas, C., Moulos, P., Maglogiannis, I., Kolisis, F.N.: The GRISSOM Platform: Enabling distributed Processing and Management of Biological Data through fusion of Grid and Web Technologies. IEEE Transactions on Information Technology in Biomedicine 2011, 15(1), 83-92.

• Chatziioannou, A., Moulos, P.: Exploiting statistical methodologies and controlled vocabularies for prioritized functional analysis of genomic experiments: The StRAnGER web application. Front Neurosci. 2011, Jan 26, 5:8.

Moulos, P., Papadodima, O., Chatziioannou, A., Loutrari, H., Roussos, C., Kolisis, F.N.: A transcriptomic computational analysis of mastic oil-treated Lewis lung carcinomas reveals molecular mechanisms targeting tumor cell growth and survival. BMC Medical Genomics 2009, 2:68.

• Chatziioannou, A., Moulos, P., Kolisis, F.N.: Gene ARMADA: an integrated multi-analysis platform for microarray data implemented in MATLAB. BMC Bioinformatics 2009 10:354.

• Nielsen, R., Pedersen, T.A., Hagenbeek, D., Moulos, P., Siersbaek, R., Megens, E., Denissov, S., Borgesen, M., Francoijs, K.J., Mandrup, S., Stunnenberg, H.G.: Genome-wide profiling of PPARgamma:RXR and RNA polymerase II occupancy reveals temporal activation of distinct metabolic pathways and changes in RXR dimer composition during adipogenesis. Genes Dev 2008, 22(21):2953-2967.

 

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