OnTheFly
Automated document annotation and biological information extraction.
OnTheFly2.0 is a web application to aid users collecting biological information from documents. With OnTheFly2.0 one is able to:
- Extract bioentities from individual articles in formats such as plain text, Microsoft Word, Excel and PDF files.
- Scan images and identify terms by using Optical Character Recognition (OCR).
- Handle multiple files simultaneously.
- Isolate proteins, chemical compounds, organisms, tissues, diseases/phenotypes and gene ontology terms.
- Extract selected terms along with their identifiers in databases.
- Perform functional enrichment analysis on a selected group of terms.
- Identify co-occurring proteins in the scientific literature and in protein domain databases
- Generate and visualize protein-protein and protein-chemical interaction networks.