BSRC "Alexander Fleming" Publications - 2009

2009 - (40)

Ikonomou, G., Samiotaki, M. and Panayotou, G. 2009, " Proteomic methodologies and their application in colorectal cancer research .", Crit. Rev. Clin. Lab. Sci . , 46. , 319-342 [PubMed].

Psarra AM, Hermann S, Panayotou G, Spyrou G. 2009, "Interaction of mitochondrial thioredoxin with glucocorticoid receptor and NF-kappaBeta modulates glucocorticoid receptor and NF-kappaB signaling in HEK 293 cells .", Biochem J. . , 422. , 521-531 [PubMed].

Stamatakis G, Tsantila N, Samiotaki M, Panayotou GN, , Dimopoulos AC, Halvadakis CP, Demopoulos CA. 2010, "Detection and isolation of antiatherogenic and antioxidant substances present in olive mill wastes by a novel filtration system .", J Agric Food Chem. , 57. , 10554-10564 [PubMed].

Christina Chandras, Thomas Weaver, Michael Zouberakis, Damian Smedley, Klaus Schughart, Nadia Rosenthal, John M. Hancock, George Kollias, Paul N. Schofield, and Aidinis V., 2009, "Models for financial sustainability of biological databases and resources ", Database (2009), Vol. 2009, , bap017; [PubMed].

Martinez-Jimenez CP, Kyrmizi I, Cardot P, Gonzalez FJ, Talianidis I. 2009, "HNF4{alpha} coordinates a transcription factor network regulating hepatic fatty acid metabolism.", Mol Cell Biol., 2009 Nov 23 [Epub ahead of print], [PubMed]

Boj SF, Servitja JM, Martin D, Rios M, Talianidis I. Guigo R, Ferrer J. 2009, "Functional targets of the monogenic diabetes transcription factors HNF-1alpha and HNF-4alpha are highly conserved between mice and humans.", Diabetes. , 2009 May;58(5):1245-53. Epub 2009 Feb 2., [PubMed]

Pampalakis G, Prosnikli E, Agalioti T, Vlahou A, Zoumpourlis V, Sotiropoulou G 2009, "A tumor-protective role for human kallikrein-related peptidase 6 in breast cancer mediated by inhibition of epithelial-to-mesenchymal transition.", Cancer Res. , 2009 May 1;69(9):3779-87. Epub 2009 Apr 21, [PubMed]

Messaritou G, Grammenoudi, S and Skoulakis EMC, 2009, "Dimerization is essential for Drosophila 14-3-3ζ protein stability and function in vivo", J. Biol. Chem, doi/10.1074/jbc.M109.045989, [JBC]

Böhm C, Hayer S, Kilian A, Zaiss MM, Finger S, Hess A, Engelke K, Kollias G, Krönke G, Zwerina J, Schett G, David JP. , 2009, "The alpha-isoform of p38 MAPK specifically regulates arthritic bone loss.", J Immunol. , 2009 Nov 1 183(9):5938-47. Epub 2009 Oct 14 [Pubmed]

Johansen C, Vestergaard C, Kragballe K, Kollias G, Gaestel M, Iversen L., 2009, "MK2 regulates the early stages of skin tumor promotion.", Carcinogenesis, 2009 Oct 6. [Epub ahead of print] [Pubmed]

Tsuji K, Cox K, Gamer L, Graf D, Economides A, Rosen V., 2009, "Conditional deletion of BMP7 from the limb skeleton does not affect bone formation or fracture repair.", J Orthop Res. , 2009 Sep 24. [Epub ahead of print] [Pubmed]

Alexiou P, Maragkakis M, Papadopoulos GL, Reczko M, Hatzigeorgiou AG ., 2009, "Lost in translation: an assessment and perspective for computational microRNA target identification.", Bioinformatics, 2009 Sep 29. [Epub ahead of print] [Pubmed]

Maragkakis M, Alexiou P, Papadopoulos GL, Reczko M, Dalamagas T, Giannopoulos G, Goumas G, Koukis E, Kourtis K, Simossis VA, Sethupathy P, Vergoulis T, Koziris N, Sellis T, Tsanakas P, Hatzigeorgiou AG ., 2009, "Accurate microRNA target prediction correlates with protein repression levels.", BMC Bioinformatics, 2009 Sep 18; 10:295 [Pubmed]

Thwin MM, Douni E, Arjunan P, Kollias G, Kumar PV, Gopalakrishnakone P. 2009, "Suppressive effect of secretory phospholipase A2 inhibitory peptide on interleukin-1beta-induced matrix metalloproteinase production in rheumatoid synovial fibroblasts, and its antiarthritic activity in hTNFtg mice.", Arthritis Res Ther., 2009 Sep 18;11(5):R138. [Epub ahead of print] , [PubMed]

Charles KA, Kulbe H, Soper R, Escorcio-Correia M, Lawrence T, Schultheis A, Chakravarty P, Thompson RG, Kollias G, Smyth JF, Balkwill FR, Hagemann T. 2009, "The tumor-promoting actions of TNF-alpha involve TNFR1 and IL-17 in ovarian cancer in mice and humans.", J Clin Invest., 2009 Sep 8. pii: 39065. doi: 10.1172/JCI39065. [Epub ahead of print] , [PubMed]

Messaritou G, Leptourgidou F. Franco, M and Skoulakis EMC, 2009, "A third functional isoform enriched in mushroom body neurons is encoded by the Drosophila 14-3-3ζ gene", FEBS, Lett. 583: 2934-2938., [PubMed]

Tsiftsoglou AS, Vizirianakis IS, Strouboulis J ., 2009, "Erythropoiesis: Model systems, molecular regulators, and developmental programs", IUBMB Life. ;61(8):800-830. , 2009 Jul 20:61(8), 800-830 [Pubmed]

Kolodziej KE, Pourfarzad F, de Boer E, Krpic S, Grosveld F, Strouboulis J. ., 2009, "Optimal use of tandem biotin and V5 tags in ChIP assays.", BMC Mol Biol. ;, 2009 Feb 5 , 10:6 [Pubmed]

Papadopoulos G, Alexiou P, Maragkakis M, Reczko M, Hatzigeorgiou AG ., 2009, "DIANA-mirPath: Integrating human and mouse microRNAs in pathways.", Bioinformatics, 2009 Aug 1, 25(15):1991-3. Epub 2009 May 12 [Pubmed]

Maragkakis M, Reczko M, Simossis VA, Alexiou P, Papadopoulos GL, Dalamagas T, Giannopoulos G, Goumas G, Koukis E, Kourtis K, Vergoulis T, Koziris N, Sellis T, Tsanakas P, Hatzigeorgiou AG ., 2009, "DIANA-microT web server: elucidating microRNA functions through target prediction.", Nucleic Acids Res, 37(Web Server issue):W273-6. Epub 2009 Apr 30 [Pubmed]

Megraw M, Pereira F, Jensen ST, Ohler U, Hatzigeorgiou AG ., 2009, "A transcription factor affinity based code for mammalian transcription initiation.", Genome Res ,, 19(4): 644-56 [Pubmed]

Papadopoulos GL, Reczko M, Simossis VA, Sethupathy P, Hatzigeorgiou AG ., 2009, "The database of experimentally supported targets: a functional update of TarBase".", Nucleic Acids Research, (Database issue) , D155-8 [Pubmed]

Afantitis A, Melagraki G, Sarimveis H, Koutentis PA, Igglessi-Markopoulou O and Kollias G, 2009, "A combined LS-SVM & MLR QSAR workflow for predicting the inhibition of CXCR3 receptor by quinazolinone analogs", Mol Divers, 2009 May 30. [Epub ahead of print] .[Pubmed]

Olympia Papadaki, Stavros Milatos, Sofia Grammenoudi, Neelanjan Mukherjee, Jack D. Keene and Dimitris L. Kontoyiannis, 2009, "Control of Thymic T Cell Maturation, Deletion and Egress by the RNA-Binding Protein HuR", Journal of Immunology, 182: 6779-6788. .[Pubmed]

Sotiria Tzima, Panayiotis Victoratos, Ksanthi Kranidioti, Maria Alexiou and George Kollias, 2009, "Myeloid heme oxygenase–1 regulates innate immunity and autoimmunity by modulating IFN-β production", J Exp Med, doi:10.1084/jem.20081582 .[Pubmed]

Maria Armaka, Vassiliki Gkretsi, Dimitris Kontoyiannis and George Kollias, 2009, "A standardized protocol for the isolation and culture of normal and arthritogenic murine synovial fibroblasts .", Nature Protocols , DOI: 10.1038/nprot.2009.102 .[Nature Protocols]

MacKenzie B, Wolff R, Lowe N, Billington CJ Jr,, Peterson A, Schmidt B, Graf D, Mina M, Gopalakrishnan R, Petryk A, 2009, "Twisted gastrulation limits apoptosis in the distal region of the mandibular arch in mice.", Dev Biol , 328: , 13-2 .[Pubmed]

Liu X, Alexiou M, Martin-Orozco N, Chung Y, Nurieva RI, Ma L, Tian Q, Kollias G, Lu S, Graf D, Dong C., 2009, "Cutting edge: A critical role of B and T lymphocyte attenuator in peripheral T cell tolerance induction.", J Immunol., 2009 Apr 15, 182(8):4516-20 .[Pubmed]

Zouvelou V, Passa O, Segklia K, Tsalavos S, Valenzuela DM, Economides AN, Graf D. , 2009, "Generation and functional characterization of mice with a conditional BMP7 allele.", Int J Dev Biol., 2009 Feb 26, [Epub ahead of print] .[Pubmed]

Zouvelou V, Luder HU, Mitsiadis TA, Graf D. , 2009, "Deletion of BMP7 affects the development of bones, teeth, and other ectodermal appendages of the orofacial complex.", J Exp Zoolog B Mol Dev Evol., 2009 Jan 6, Epub ahead of print .[Pubmed]

Kotsianidis I, Nakou E, Bouchliou I, Tzouvelekis A, Spanoudakis E, Steiropoulos P, Sotiriou I, Aidinis V., Margaritis D, Tsatalas C, Bouros D., 2009, "Global Impairment of CD4+CD25+FOXP3+ T Regulatory Cells in Idiopathic Pulmonary Fibrosis.", Am J Respir Crit Care Med., Apr 2, [Epub ahead of print] [PubMed].

Katsanou V, Milatos S, Yiakouvaki A, Sgantzis N, Kotsoni A, Alexiou M, Harokopos V, Aidinis V., Hemberger M, Kontoyiannis DL., 2009, "The RNA-binding protein Elavl1/HuR is essential for placental branching morphogenesis and embryonic development.", Mol Cell Biol., May 29 , 10:2762-76 [PubMed].

Eirini Trompouki, Ageliki Tsagaratou, Stylianos K Kosmidis, Pascal Dolle, Jun Qian, Dimitris L Kontoyiannis, Wellington V. Cardoso and George Mosialos, 2009, "Truncation of the catalytic domain of the cylindromatosis tumor suppressor impairs lung maturation ", Neoplasia, Volume 11, Issue 5 [Abstract].

Tzouvelekis A, Aidinis V, Harokopos V, Karameris A, Zacharis G, Mikroulis D, Konstantinou F, Steiropoulos P, Sotiriou I, Froudarakis M, Pneumatikos I, Tringidou R, Bouros D. , 2009, "Down-regulation of the inhibitor of growth family member 4 (ING4) in different forms of pulmonary fibrosis.", Respir Res. , Feb 27. 10(1):14.[Epub ahead of print] [Pubmed].

 

Anastasios Moressis, Anke R. Friedrich, Elias Pavlopoulos, Ronald L. Davis Efthimios M. C. Skoulakis, 2009, "A Dual Role for the Adaptor Protein DRK in Drosophila Olfactory Learning and Memory .", J. Neurosci. , 2009 29: 2611-2625., [PubMed]

Maniatis NA, Harokopos V, Thanassopoulou A, Oikonomou N, Mersinias V, Witke W, Orfanos SE, Armaganidis A, Roussos C, Kotanidou A, and Aidinis V., 2009, "A Critical Role for Gelsolin in Ventilator-Induced Lung Injury.", Am J Respir Cell Mol Biol. , Feb 6. [Epub ahead of print] [Pubmed].

Oikonomou N, Thanassopoulou A, Tzouvelekis A, Harokopos V, Paparountas T, Nikitopoulou I, Witke W, Karameris A, Kotanidou A, Bouros D, and Aidinis V., 2009, "Gelsolin expression is necessary for the development of modelled pulmonary inflammation and fibrosis.", Thorax. , Feb 12. [Epub ahead of print] [Pubmed].

Melagraki G, Afantitis A, Sarimveis H, Koutentis PA, Kollias G, Igglessi-Markopoulou O. 2009, "Predictive QSAR workflow for the in silico identification and screening of novel HDAC inhibitors.", Mol Divers. , [Epub ahead of print], [PubMed].

Huang CH, Vallejo JG, Kollias G, Mann DL. 2009, "Role of the Innate Immune System in Acute Viral Myocarditis.", Basic Res Cardiol. , [Epub ahead of print], [PubMed].

Victoratos P, Kollias G . 2009, "Induction of autoantibody-mediated spontaneous arthritis critically depends on follicular dendritic cells.", Immunity , 30(1):130-42 , [PubMed].

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