Zouberakis M, Chandras C, Swertz M, Smedley D, Gruenberger M, Bard J, Schughart K, Rosenthal N, Hancock JM, Schofield PN, Kollias G, Aidinis V 2010, "Mouse Resource Browser--a database of mouse databases.", Database (Oxford). , Jul 6 2010, baq010. [PubMed].

Smedley D, Schofield P, Chen CK, Aidinis V., Ainali C, Bard J, Balling R, Birney E, Blake A, Bongcam-Rudloff E, Brookes AJ, Cesareni G, Chandras C, Eppig J, Flicek P, Gkoutos G, Greenaway S, Gruenberger M, Hériché JK, Lyall A, Mallon AM, Muddyman D, Reisinger F, Ringwald M, Rosenthal N, Schughart K, Swertz M, Thorisson GA, Zouberakis M, Hancock JM. 2010, "Finding and sharing: new approaches to registries of databases and services for the biomedical sciences..", Database (Oxford) , Jul 6;2010, baq014 [PubMed].

Chatzigeorgiou A, Harokopos V, Mylona-Karagianni C, Tsouvalas E, Aidinis V, Kamper E. 2010, "The pattern of inflammatory/anti-inflammatory cytokines and chemokines in type 1 diabetic patients over time.", Ann Med. , 2010 Jun 23., [Epub ahead of print] [PubMed].

Xirakia C, Koltsida O, Stavropoulos A, Thanassopoulou A, Aidinis V, Sideras P, Andreakos E. 2010, "TLR7-triggered Immune Response in the Lung Mediates Acute and Long-lasting Suppression of Experimental Asthma.", Am J Respir Crit Care Med. , Jun 1;181(11): , 1207-16 [PubMed].

Fotopoulou S, Oikonomou N, Grigorieva E, Nikitopoulou I, Paparountas T, Thanassopoulou A, Zhao Z, Xu Y, Kontoyiannis DL, Remboutsika E, Aidinis V 2010, "ATX expression and LPA signalling are vital for the development of the nervous system.", Dev Biol., Mar 15;339(2) , :451-64 [PubMed].

Morgan H, Beck T, Blake A, Gates H, Adams N, Debouzy G, Leblanc S, Lengger C, Maier H, Melvin D, Meziane H, Richardson D, Wells S, White J, Wood J, EUMODIC Consortium , de Angelis MH, Brown SD, Hancock JM, Mallon AM., 2010, "EuroPhenome: a repository for high-throughput mouse phenotyping data.", Nucleic Acids Res, 2010 Jan;38(Database issue):, D577-85. [PubMed].

Christina Chandras, Thomas Weaver, Michael Zouberakis, Damian Smedley, Klaus Schughart, Nadia Rosenthal, John M. Hancock, George Kollias, Paul N. Schofield, and Aidinis V., 2009, "Models for financial sustainability of biological databases and resources ", Database (2009), Vol. 2009, , bap017; [PubMed].

Kotsianidis I, Nakou E, Bouchliou I, Tzouvelekis A, Spanoudakis E, Steiropoulos P, Sotiriou I, Aidinis V., Margaritis D, Tsatalas C, Bouros D., 2009, "Global Impairment of CD4+CD25+FOXP3+ T Regulatory Cells in Idiopathic Pulmonary Fibrosis.", Am J Respir Crit Care Med., Apr 2, 179(12):1121-30 [PubMed].

Katsanou V, Milatos S, Yiakouvaki A, Sgantzis N, Kotsoni A, Alexiou M, Harokopos V, Aidinis V., Hemberger M, Kontoyiannis DL., 2009, "The RNA-binding protein Elavl1/HuR is essential for placental branching morphogenesis and embryonic development.", Mol Cell Biol., 29(10) :, 2762-76 [PubMed].

Tzouvelekis A, Aidinis V, Harokopos V, Karameris A, Zacharis G, Mikroulis D, Konstantinou F, Steiropoulos P, Sotiriou I, Froudarakis M, Pneumatikos I, Tringidou R, Bouros D. , 2009, "Down-regulation of the inhibitor of growth family member 4 (ING4) in different forms of pulmonary fibrosis.", Respir Res. , Feb 27. 10(1):14.[Epub ahead of print] [Pubmed].

Maniatis NA, Harokopos V, Thanassopoulou A, Oikonomou N, Mersinias V, Witke W, Orfanos SE, Armaganidis A, Roussos C, Kotanidou A, and Aidinis V., 2009, "A Critical Role for Gelsolin in Ventilator-Induced Lung Injury.", Am J Respir Cell Mol Biol. , 41(4): 426-32 [Pubmed].

Oikonomou N, Thanassopoulou A, Tzouvelekis A, Harokopos V, Paparountas T, Nikitopoulou I, Witke W, Karameris A, Kotanidou A, Bouros D, and Aidinis V., 2009, "Gelsolin expression is necessary for the development of modelled pulmonary inflammation and fibrosis.", Thorax. , 64(6): 467-75 [Pubmed].

Smedley D, Swertz MA, Wolstencroft K, Proctor G, Zouberakis M, Bard J, Hancock JM, Schofield P. , 2008, "Solutions for data integration in functional genomics: a critical assessment and case study.", Brief Bioinform. , 9(6): 532-44 [Pubmed].

Maglogiannis .I, Sarimveis H.,Kiranoudis C., Chatziioannou A.A., Oikonomou N. and, Aidinis V., 2008, "Radial Basis Function neural networks classification for the recognition of idiopathic pulmonary fibrosis in microscopic images", IEEE Trans Inf Technol Biomed., 12(1): 42-54. [PubMeb].

Vasilopoulos Y, Gkretsi V, Armaka M, Aidinis V, Kollias G 2007, "Actin cytoskeleton dynamics linked to synovial fibroblast activation as a novel pathogenic principle in TNF-driven arthritis.", Ann Rheum Dis., 66 Suppl 3:iii23-8 (Review) [PubMed].

Aidinis V. Chandras C, Manoloukos M, Thanassopoulou A, Kranidioti K, Armaka M, Douni E, Kontoyiannis DL, Zouberakis M, Kollias G; the Mugen NoE consortium., 2008, "MUGEN mouse database; Animal models of human immunological diseases.", Nucleic Acids Res., 36 (Database issue) :D1048-54 [Pubmed]

Tzouvelekis A, Harokopos V, Paparountas T, Oikonomou N, Chatziioannou A, Vilaras G, Tsiambas E, Karameris A, Bouros D and Aidinis V., 2007, "Comparative expression profiling in pulmonary fibrosis suggests a role of hypoxia-inducible factor-1alpha in disease pathogenesis", Am J Respir Crit Care Med, 176(11) :1108-19 [Pubmed]

The Mouse Phenotype Database Integration Consortium ( John M. Hancock, Niels C. Adams, Aidinis V., Andrew Blake, Judith A. Blake, Molly Bogue, Steve D. M. Brown, Elissa Chesler, Duncan Davidson, Christopher Duran, Janan T. Eppig, Valerie Gailus-Durner, Hilary Gates, Georgios V. Gkoutos, Simon Greenaway, Martin Hrabe´ De Angelis, Kollias George, Sophie Leblanc, Kirsty Lee, Christoph Lengger, Holger Maier, Ann-Marie Mallon, Hiroshi Masuya, David G. Melvin, Werner Mu ller, Helen Parkinson, Glenn Proctor, Eli Reuveni, Paul Schofield, Aadya Shukla, Cynthia Smith, Tetsuro Toyoda, Laurent Vasseur, Shigeharu Wakana, Alison Walling, Jacqui White, Joe Wood, Michalis Zouberakis) , 2007, "Integration of mouse phenome data resources", Mamm. Genome., 18(3):157-63., [Pubmed]

Oikonomou N., Harokopos V., Zalevsky J., Valavanis C., Kotanidou A., Szymkowski D.E., Kollias G. and, Aidinis V., 2006, "Soluble TNF Mediates the Transition from Pulmonary Inflammation to Fibrosis.", PLoS One, 2006 Dec 27, e108 [PubMed].

Argyropoulos C, Chatziioannou AA., Nikiforidis G., Moustakas A., Kollias G. and , Aidinis V., 2006, "Operational criteria for selecting a cDNA microarray data normalization algorithm", Oncol. Rep., 15:983-996. [PubMed]

Aidinis V. Carninci P., Armaka M., Witke W., Harokopos V., Pavelka N., Koczan D., Argyropoulos C., Thwin M., Möller S., Gopalakrishnakone P., Ricciardi-Castagnoli P., Thiesen H.J., Hayashizaki Y. and Kollias G., , 2005, "Twin expression profiling identifies cytoskeletal rearrangements in synovial fibroblasts as a novel pathophysiological determinant of modeled Rheumatoid Arthritis", PLoS Genetics, (Vol 1(4), e48 [PubMed].

The FANTOM consortium and RIKEN Genome Exploration Research group and Genome Science group., 2005, "The transcriptional landscape of the mammalian genome", Science., Sep 2., 309(5740):1559-63 [PubMed].

Thwin M. M., Douni E., Aidinis V., Kollias G., Kodama K., Sato K., Satish R. L., Mahendran R., Gopalakrishnakone P., 2004, "Effect of phospholipase A2 inhibitory peptide on inflammatory arthritis in a TNF transgenic mouse model: a time-course ultrastructural study", Arthritis Res. & Ther., 6 (3), R282-94 [PubMed].

Carninci P., Waki K., Shiraki, Konno H., Shibata K., Itoh M., Aizawa K., Arakawa T., Ishii Y., Sasaki Y., Bono H., Kondo S., Sugahara Y., Saito R., Osato N., Fukuda S., Sato K., Watahiki K., Hirozane-Kishikawa T., Nakamura M., Shibata Y., Yasunishi A., Kikuchi N., Yoshiki A., Kusakabe M., Gustincich S., Beisel K., Pavan W., Aidinis V., Nakagawara A., Held W., Iwata H., Kono T., Nakauchi H., Lyons P., Wells C., Hume D., Fagiolini M., Hensch T., Brinkmeier M., Camper S., Muramatsu M., Okazaki Y., Kawai Y., Hayashizaki Y., 2003, "Targeting a complex transcriptome: The construction of the mouse full-length cDNA encyclopedia", Genome Res., 13, 1273-89 [PubMed].

Aidinis V., Plows D., Haralambous S., Armaka M., Papadopoulos P., Kanaki M. Z., Koczan D., Thiesen H. J., Kollias G., 2003, "Functional analysis of an arthritogenic synovial fibroblast", Arthritis Res. & Ther., 5 (3), 140-157 [PubMed].

Aidinis V., Diaz D. C., Gomez C. A., Bachattaraya D., Spanopoulou E., Sanatagata S. E., 2000, "Definition of minimal domains of interaction within the recombination-activating genes 1 and 2 recombinase complex", J. Immunol., 164 (11), 5826-5832 [PubMed].

Aidinis V., Bonaldi T., Beltrame M., Santagata S., Bianchi M. E., Spanopoulou E., 1999, "The RAG1 homeodomain recruits HMG1 and HMG2 to facilitate Recombination Signal Sequence binding and to enhance the intrinsic DNA-bending activity of RAG1-RAG2", Mol. Cell. Biol., 19 (10), 6532-6542 [PubMed].

Santagata S., Aidinis V., Spanopoulou S., 1998, "The effect of Me+ cofactors at the initial stages of V(D)J recombination", J. Biol. Chem., 273 (26), 16325-16331 [PubMed].

Manousakis M., Kistis K. G., Aidinis V., Guialis A., Moutsopoulos H. M., 1995, "Detection of Human-specific anti-La (SSB) antibodies in patients with Rheumatoid Arthritis", J. Autoimm., 8, 959-969 [PubMed].

Aidinis V., Sekeris C. E., Guialis A., 1995, "Two immunologically related polypeptides of 72/74 KD specify a novel 70-110S heterogeneous nuclear RNP", Nucleic. Acids. Res., 23 (14), 2742-2753 [PubMed].

Guialis A., Patrinou-Georgoula M., Aidinis V., Sekeris C. E., Moutsopoulos H. M., 1994, "Anti-5S RNP antibody levels correlate with disease activity in a patient with SLE syndrome", Clin. Exp. Immunol., 95, 385-389 [PubMed].

Manousakis M., Kistis K. G., Liu X., Aidinis V., Guialis A., Moutsopoulos H. M., 1993, "Detection of anti-RO (SSA) antibodies in autoimmune diseases: comparison of five methods", Br. J. Rheum., 32, 449-455 [PubMed].

Aidinis V., Dangli A., Makrinos P., Patrinou-Georgoula M., Sekeris C. E., Guialis A., 1990, "Immunochemical identification of a novel nuclear RNP complex of 70-110S from rat liver", In 'Nuclear structure and function', Ed. I. B. Zbarsky and J. R. Harris, Plenum Press, New York, 265-272.